CFAR-Supported Papers

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How do I get my papers on the list?

If your research was supported through CFAR cores or grant funding, please include our grant number (P30 AI036214) in the funding or acknowledgements section of your papers. Follow these instructions and examples.

We'll add your papers to the list below when you notify us that they are in press or when we receive notice from the NIH. Who knows? One of your papers may be selected as the Directors' Choice on the CFAR home page.

Papers Supported by the San Diego CFAR

2017

Ahn MY, Wertheim JO, Kim WJ, Kim SW, Lee JS, Ann HW, Jeon Y, Ahn JY, Song JE, Oh DH, Kim YC, Kim EJ, Jung IY, Kim MH, Jeong W, Jeong SJ, Ku NS, Kim JM, Smith DM, Choi JY. HIV-1 transmission networks across South Korea. AIDS Res Hum Retroviruses. 2017:doi: 10.1089/aid.2016.0212. [Epub ahead of print]. PMID: 28346838. PMCID: NIHMSID891761.

Akrami K, Coletta J, Mehta S, Fierer J. Gordonia sternal wound infection treated with ceftaroline: case report and literature review. JMM Case Rep. 2017;4(9):e005113. PMID: 29114395. PMCID: 5643002.

Bashratyan R, Regn D, Rahman MJ, Marquardt K, Fink E, Hu WY, Elder JH, Binley J, Sherman LA, Dai YD. Type 1 diabetes pathogenesis is modulated by spontaneous autoimmune responses to endogenous retrovirus antigens in NOD mice. Eur J Immunol. 2017;47(3):575-584. PMID: 28083937.

Beliakova-Bethell, Nadejda; Hezareh, Marjan; Wong, Joseph K; Strain, Matthew C; Lewinski, Mary K; Richman, Douglas D; Spina, Celsa A. Relative efficacy of T cell stimuli as inducers of productive HIV-1 replication in latently infected CD4 lymphocytes from patients on suppressive cART. Virology. 2017 Aug;508:127-133. PMID: 28527342. 

Boehme SA, Franz-Bacon K, Ludka J, DiTirro DN, Ly TW, Bacon KB. MAP3K19 Is Overexpressed in COPD and Is a Central Mediator of Cigarette Smoke-Induced Pulmonary Inflammation and Lower Airway Destruction. PLoS One. 2016;11(12):e0167169. PMID: 27935962. PMCID: 5147866

Browne SH, Diaz-Perez JA, Preziosi M, King CC, Jones GA, Jain S, Sun X, Reid EG, VandenBerg S, Wang HY. mTOR activity in AIDS-related diffuse large B-cell lymphoma. PLoS One. 2017;12(2):e0170771. PMID: 28192480. PMCID: 5305194.

Cachay, Edward R; Agmas, Wollelaw; Christopher Mathews, Wm. Disparities in the clinical evolution of anal neoplasia in an HIV-infected cohort. J Racial Ethn Health Disparities. 2017 Mar 23. PMID: 28332090. PMCID: 5610590.

Cachay ER, Ballard C, Colwell B, Torriani F, Hicks C, Mathews WC. Validation of a questionnaire to monitor symptoms in HIV-infected patients during hepatitis C treatment. AIDS Res Ther. 2017;14(1):56. PMID: 28931406. PMCID: PMC5607579.

Cepeda JA, Strathdee SA, Arredondo J, Mittal ML, Rocha T, Morales M, Clairgue E, Bustamante E, Abramovitz D, Artamonova I, Banuelos A, Kerr T, Magis-Rodriguez CL, Beletsky L. Assessing police officers' attitudes and legal knowledge on behaviors that impact HIV transmission among people who inject drugs. Int J Drug Policy. 2017;50:56-63. PMID: 29028564. PMCID: 5705567.

Carter, Christoph; Akrami, Kevan; Hall, Drew; Smith, Davey; Aronoff-Spencer, Eliah. Lyophilized visually readable loop-mediated isothermal reverse transcriptase nucleic acid amplification test for detection Ebola Zaire RNAJ Virol Methods. 2017 Jun;244:32-38. PMID: 28242293. PMCID: 5568651.

Caskey M, Schoofs T, Gruell H, Settler A, Karagounis T, Kreider EF, Murrell B, Pfeifer N, Nogueira L, Oliveira TY, Learn GH, Cohen YZ, Lehmann C, Gillor D, Shimeliovich I, Unson-O'Brien C, Weiland D, Robles A, Kummerle T, Wyen C, Levin R, Witmer-Pack M, Eren K, Ignacio C, Kiss S, West AP, Jr., Mouquet H, Zingman BS, Gulick RM, Keler T, Bjorkman PJ, Seaman MS, Hahn BH, Fatkenheuer G, Schlesinger SJ, Nussenzweig MC, Klein F. Antibody 10-1074 suppresses viremia in HIV-1-infected individualsNat Med. 2017;23(2):185-191. PMID: 28092665. PMCID: 5467219.

Chaillon A, Gianella S, Lada SM, Perez-Santiago J, Jordan P, Ignacio C, Karris M, Richman D, Mehta SR, Little SJ, Wertheim JO, Smith DM. Size, Composition, and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc. J Virol. 2017. PMID: 29142136

Chaillon A, Smith DM, Vanpouille C, Lisco A, Jordan P, Caballero G, Vargas M, Gianella S, Mehta SR. HIV trafficking between blood and semen during early untreated HIV infectionJ Acquir Immune Defic Syndr. 2017;74(1):95-102. PMCID: 5140710

Chaillon A, Nakazawa M, Wertheim JO, Little SJ, Smith DM, Mehta SR, Gianella S. No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men. J Virol. 2017;91(21). PMID: 28794047. PMCID: 5640831

Chaillon, Antoine; Essat, Asma; Frange, Pierre; Smith, Davey M; Delaugerre, Constance; Barin, Francis; Ghosn, Jade; Pialoux, Gilles; Robineau, Olivier; Rouzioux, Christine; Goujard, Cécile; Meyer, Laurence; Chaix, Marie-Laure; on behalf the ANRS PRIMO Cohort Study. Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies. Retrovirology. 2017 Feb 21;14(1):15. PMID: 28222757. PMCID: 5322782.

Chen X, Ye M, Pang W, Smith DM, Zhang C, Zheng YT. First appearance of HIV-1 CRF07_BC and CRF08_BC outside China. AIDS Res Hum Retroviruses. 2017;33(1):74-76. PMID: 27392826.

Choi JY, Pond SLK, Anderson CM, Richman DD, Smith DM. Molecular features of the V1-V4 coding region of sexually transmitted Human Immunodeficiency Virus Type 1. J Infect Dis. 2017;215(10):1506-1513. PMID: 28419276.

Cholera R, Pence BW, Bengtson AM, Crane HM, Christopoulos K, Cole SR, Fredericksen R, Gaynes BN, Heine A, Mathews WC, Mimiaga MJ, Moore R, Napravnik S, O'Clerigh C, Safren S, Mugavero MJ. Mind the Gap: Gaps in antidepressant treatment, treatment adjustments, and outcomes among patients in routine HIV care in a multisite US clinical cohort. PLoS One. 2017;12(1):e0166435. PMID: 28125593. PMCID: 5268441.

Christensen-Quick A, Vanpouille C, Lisco A, Gianella S. Cytomegalovirus and HIV Persistence: Pouring Gas on the Fire. AIDS Res Hum Retroviruses. 2017;33(S1):S23-S30. PMID: 29140108. PMCID: 5684659

Crane HM, Paramsothy P, Drozd DR, Nance RM, Delaney JA, Heckbert SR, Budoff MJ, Burkholder GA, Willig JH, Mugavero MJ, Mathews WC, Crane PK, Moore RD, Eron JJ, Napravnik S, Hunt PW, Geng E, Hsue P, Rodriguez C, Peter I, Barnes GS, McReynolds J, Lober WB, Crothers K, Feinstein MJ, Grunfeld C, Saag MS, Kitahata MM, Centers for AIDS Research Network of Integrated Clinical Systems Cohort. Types of myocardial infarction among human immunodeficiency virus-infected individuals in the United States. JAMA Cardiol. 2017;2(3):260-267. PMID: 28052152.

Crane HM, Nance RM, Merrill JO, Hutton H, Chander G, McCaul ME, Mathews WC, Fredericksen R, Simoni JM, Mayer K, Mugavero MJ, Willig JH, Burkholder G, Drozd DR, Mimiaga M, Lau B, Kim HN, Cropsey K, Moore RD, Christopoulos K, Geng E, Eron JJ, Napravnik S, Kitahata MM, Saag MS, Delaney JA. Not all non-drinkers with HIV are equal: demographic and clinical comparisons among current non-drinkers with and without a history of prior alcohol use disorders. AIDS Care. 2017;29(2):177-184. PMID: 27482893.

de Almeida, Sergio M; Rotta, Indianara; Ribeiro, Clea E; Oliveira, Michelli F; Chaillon, Antoine; de Pereira, Ana Paula; Cunha, Ana Paula; Zonta, Marise; Bents, Joao França; Raboni, Sonia M; Smith, Davey; Letendre, Scott; Ellis, Ronald J. Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study. J Neurovirol. 2017 Jun;23(3):460-473. PMID: 28247269. PMCID: 5441962.

Dinesha TR, Boobalan J, Sivamalar S, Solomon SS, Poongulali S, Pradeep A, Murugavel KG, Pachamuthu B, Smith DM, Saravanan S. HIV, HBV and HCV prevalence among high risk populations in South India. AIDS Res Hum Retroviruses. 2017. PMID: 29161880

Drozd DR, Saag MS, Westfall AO, Mathews WC, Haubrich R, Boswell SL, Cole SR, Porter D, Kitahata MM, Juday T, Rosenblatt L, CFAR Network of Integrated Clinical Systems. Comparative effectiveness of single versus multiple tablet antiretroviral therapy regimens in clinical HIV practiceMedicine (Baltimore). 2017;96(14):e6275. PMID: 28383402. PMCID: 5411186.

Elander J, Richardson C, Morris J, Robinson G, Schofield MB. Motivational and behavioural models of change: A longitudinal analysis of change among men with chronic haemophilia-related joint pain. Eur J Pain. 2017;21(8):1384-1396. PMID: 28419629.

Fatukasi TV, Cole SR, Moore RD, Mathews WC, Edwards JK, Eron JJ, and the CNICS investigators. Risk factors for delayed antiretroviral therapy initiation among HIV-seropositive patientsPLoS One. 2017;12(7):e0180843. PMID: 28700693. PMCID: 5507276.

Feinstein MJ, Nance RM, Drozd DR, Ning H, Delaney JA, Heckbert SR, Budoff MJ, Mathews WC, Kitahata MM, Saag MS, Eron JJ, Moore RD, Achenbach CJ, Lloyd-Jones DM, Crane HM. Assessing and refining myocardial infarction risk estimation among patients with human immunodeficiency virus: A study by the Centers for AIDS Research Network of Integrated Clinical Systems. JAMA Cardiol. 2017;2(2):155-162. PMID: 28002550. PMCID: 5310962.

Flynn WF, Haldane A, Torbett BE, Levy RM. Inference of epistatic effects leading to entrenchment and drug resistance in HIV-1 protease. Mol Biol Evol. 2017;34(6):1291-1306. PMID: 28369521. PMCID: 5435099.

Fraser, Hannah; Zibbell, Jon; Hoerger, Thomas; Hariri, Susan; Vellozzi, Claudia; Martin, Natasha K; Kral, Alex H; Hickman, Matthew; Ward, John W; Vickerman, Peter. Scaling up HCV prevention and treatment interventions in rural USA - model projections for tackling an increasing epidemic. Addiction. 2017 Jul 22. PMID: 28734093. 

Fraser H, Martin NK, Brummer-Korvenkontio H, Carrieri P, Dalgard O, Dillon J, Goldberg D, Hutchinson S, Jauffret-Roustide M, Kaberg M, Matser AA, Maticic M, Midgard H, Mravcik V, Ovrehus A, Prins M, Reimer J, Robaeys G, Schulte B, van Santen DK, Zimmermann R, Vickerman P, Hickman M. Model projections on the impact of HCV treatment in the prevention of HCV transmission among people who inject drugs in Europe". J Hepatol. 2017. PMID: 29080808.

Fraser H, Mukandavire C, Martin NK, Hickman M, Cohen MS, Miller WC, Vickerman P. HIV treatment as prevention among people who inject drugs: a re-evaluation of the evidence. Int J Epidemiol. 2017;46(2):466-478. PMID: 27524816. PMCID: NIHMSID: 883866.

Fraser H, Zibbell J, Hoerger T, Hariri S, Vellozzi C, Martin NK, Kral AH, Hickman M, Ward JW, Vickerman P. Scaling-up HCV prevention and treatment interventions in rural United States- model projections for tackling an increasing epidemic. Addiction. 2017:[Epub ahead of print]. PMID: 28734093.

Freeman J, Vernon J, Pilling S, Morris K, Nicholson S, Shearman S, Longshaw C, Wilcox MH. The ClosER Study: results from a three-year pan-European longitudinal surveillance of antibiotic resistance among prevalent Clostridium difficile ribotypes, 2011-2014. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 2017. PMID: 29066403.

Gaines TL, Werb D, Arredondo J, Alaniz VM, Vilalta C, Beletsky L. The spatial-temporal pattern of policing following a drug policy reform: Triangulating self-reported arrests with official crime statistics. Subst Use Misuse. 2017;52(2):214-222. PMID: 27767367. PMCID: 5378066.

Georghiou SB, Seifert M, Catanzaro DG, Garfein RS, Rodwell TC. Increased tuberculosis patient mortality associated with Mycobacterium tuberculosis mutations conferring resistance to second-line antituberculous drugs. J Clin Microbiol. 2017;55(6):1928-1937. PMID: 28404672. PMCID: 5442550.

Gianella S, Chaillon A, Mutlu EA, Engen PA, Voigt RM, Keshavarzian A, Losurdo J, Chakradeo P, Lada SM, Nakazawa M, Landay AL. Effect of cytomegalovirus and Epstein-Barr virus replication on intestinal mucosal gene expression and microbiome composition of HIV-infected and uninfected individuals. AIDS. 2017;31(15):2059-2067.PMID: 28906277 PMCID: 5654609

Gianella S, Haw JS, Blumenthal J, Sullivan B, Smith DM. The Importance of HIV Research for Transgender and Gender Non-Binary Individuals. Clin Infect Dis. 2017. PMID: 29126186

Gianella S, Taylor J, Brown TR, Kaytes A, Achim CL, Moore DJ, Little SJ, Ellis RJ, Smith DM. Can research at the end of life be a useful tool to advance HIV cure? AIDS. 2017;31(1):1-4. PMCID: 5137789

Gianella S, Tsibris A, Barr L, Godfrey C. Barriers to a cure for HIV in women. J Int AIDS Soc. 2016;19(1):20706. PMID: 26900031. PMCID: 4761692

Gift SK, Leaman DP, Zhang L, Kim AS, Zwick MB. Functional Stability of HIV-1 Envelope Trimer Affects Accessibility to Broadly Neutralizing Antibodies at Its Apex. J Virol. 2017;91(24). PMID: 28978711. PMCID: 5709597

Glinka ER, Smith DM, Johns ST. Now is the time to study the timing of influenza vaccine. HIV Med. 2017:doi: 10.1111/hiv.12486. [Epub ahead of print]. PMID: 28116796.

Gountas, Ilias; Sypsa, Vana; Anagnostou, Olga; Martin, Natasha; Vickerman, Peter; Kafetzopoulos, Evangelos; Hatzakis, Angelos. Treatment and primary prevention in people who inject drugs for chronic hepatitis C infection: is elimination possible in a high-prevalence setting? Addiction. 2017 Jul;112(7):1290-1299. PMID: 28107585. PMCID: 5553636. 

Graves SK, Little SJ, Hoenigl M. Risk profile and HIV testing outcomes of women undergoing community-based testing in San Diego 2008-2014Sci Rep. 2017;7:42183. PMID: 28165056. PMCID: 5292713.

Green N, Hoenigl M, Chaillon A, Anderson CM, Kosakovsky Pond SL, Smith DM, Little SJ. Partner services in adults with acute and early HIV infectionAIDS. 2017;31(2):287-293. PMCID: 5177524

Guo B, Kaylor-Hughes C, Garland A, Nixon N, Sweeney T, Simpson S, Dalgleish T, Ramana R, Yang M, Morriss R. Factor structure and longitudinal measurement invariance of PHQ-9 for specialist mental health care patients with persistent major depressive disorder: Exploratory Structural Equation Modelling. J Affect Disord. 2017;219:1-8. PMID: 28501679.

Hartzler, Bryan; Carlini, Beatriz H; Newville, Howard; Crane, Heidi M; Eron, Joseph J; Geng, Elvin H; Mathews, W Christopher; Mayer, Kenneth H; Moore, Richard D; Mugavero, Michael J; Napravnik, Sonia; Rodriguez, Benigno; Donovan, Dennis M. Identifying HIV care enrollees at-risk for cannabis use disorder. AIDS Care. 2017 Jul;29(7):846-850. PMID: 28006972. PMCID: 5573588 

Hickman M, Martin NK, Huxtable R. Hepatitis C virus prevention and treatment prioritization-ethical, economic and evidential dimensions of early rather than delayed treatment for people who inject drugsAddiction. 2017;112(2):201-203. PMCID: 5233591

Hoenigl, Martin; Braun, Dominique L; Kouyos, Roger; Günthard, Huldrych F; Little, Susan J. Evaluation of the Predictive Potential of the Short Acute Retroviral Syndrome Severity Score for HIV-1 Disease Progression in Individuals With Acute HIV Infection. J Acquir Immune Defic Syndr. 2017 Apr 1;74(4):e114-e117. PMID: 28225720. PMCID: 5324781.

Honeycutt JB, Thayer WO, Baker CE, Ribeiro RM, Lada SM, Cao Y, Cleary RA, Hudgens MG, Richman DD, Garcia JV. HIV persistence in tissue macrophages of humanized myeloid-only mice during antiretroviral therapy. Nat Med. 2017;23(5):638-643. PMID: 28414330. PMCID: 5419854.

Hu YS, Cang H, Lillemeier BF. Superresolution imaging reveals nanometer- and micrometer-scale spatial distributions of T-cell receptors in lymph nodes. Proc Natl Acad Sci U S A. 2016;113(26):7201-7206. PMID: 27303041. PMCID: 4932922

Hunter H, Rochester L, Morris R, Lord S. Longitudinal falls data in Parkinson's disease: feasibility of fall diaries and effect of attrition. Disabil Rehabil. 2017:1-6. PMID: 28573883.

Innes S, van Toorn R, Otwombe K, Dobbels E, van Zyl G, Cotton MF, Laughton B. Late onset HIV encephalopathy in children with long-standing virologic suppression followed by slow spontaneous recovery despite no change in antiretroviral therapy - four case reportsPediatr Infect Dis J. 2017:[Epub ahead of print]  doi: 10.1097/INF.0000000000001694. PMID: 28719495. 

Johnson CE, Crawford BE, Stavridis M, Ten Dam G, Wat AL, Rushton G, Ward CM, Wilson V, van Kuppevelt TH, Esko JD, Smith A, Gallagher JT, Merry CL. Essential alterations of heparan sulfate during the differentiation of embryonic stem cells to Sox1-enhanced green fluorescent protein-expressing neural progenitor cells. Stem Cells. 2007;25(8):1913-1923. PMID: 17464092

Jones J, Hoenigl M, Siegler AJ, Sullivan PS, Little S, Rosenberg E. Assessing the performance of 3 Human Immunodeficiency Virus incidence risk scores in a cohort of black and white men Wwo have sex with men in the south. Sex Transm Dis. 2017;44(5):297-302. PMID: 28407646. PMCID: 5407317.

Kamat R, McCutchan A, Kumarasamy N, Marcotte TD, Umlauf A, Selvamuthu P, Meyer R, Letendre S, Heaton R, Bharti AR. Neurocognitive functioning among HIV-positive adults in southern India. J Neurovirol. 2017:[E-pub ahead of print] doi: 10.1007/s13365-13017-10546-13368. PMID: 28681344. PMCID: 5656514.

Karris, Maile Y; Jain, Sonia; Day, Tyler R C; Pérez-Santiago, Josué; Goicoechea, Miguel; Dubé, Michael P; Sun, Xiaoying; Spina, Celsa; Daar, Eric S; Haubrich, Richard H; Morris, Sheldon; California Collaborative Treatment Group (CCTG) 589 Study Team. HIV viral kinetics and T cell dynamics in antiretroviral naïve persons starting an integrase strand transfer inhibitor and protease inhibitor regimen. HIV Clin Trials. 2017 Mar;18(2):67-74. PMID: 28134057. PMCID: 5613656.

Katz ZB, Novotna L, Blount A, Lillemeier BF. A cycle of Zap70 kinase activation and release from the TCR amplifies and disperses antigenic stimuli. Nat Immunol. 2017;18(1):86-95. PMID: 27869819. PMCID: 5490839

Khondoker M, Rafnsson SB, Morris S, Orrell M, Steptoe A. Positive and Negative Experiences of Social Support and Risk of Dementia in Later Life: An Investigation Using the English Longitudinal Study of Ageing. J Alzheimers Dis. 2017;58(1):99-108. PMID: 28387667. PMCID: 5438469.

Kim JG, Rodriguez HP, Estlin KA, Morris CG. Impact of Longitudinal Electronic Health Record Training for Residents Preparing for Practice in Patient-Centered Medical Homes. Perm J. 2017;21. PMID: 28746024. PMCID: 5528802.

MacGregor L, Martin NK, Mukandavire C, Hickson F, Weatherburn P, Hickman M, Vickerman P. Behavioural, not biological, factors drive the HCV epidemic among HIV-positive MSM: HCV and HIV modelling analysis including HCV treatment-as-prevention impact. Int J Epidemiol. 2017:[Epub ahead of print ] doi: 10.1093/ije/dyx1075. PMID: 28605503. PMCID: PMC Journal - in process.

Martin, Natasha K; Skaathun, Britt; Vickerman, Peter; Stuart, David. Modeling combination HCV prevention among HIV-infected men who have sex with men and people who inject drugs. AIDS Rev. 2017 Apr - Jun;19(2):97-104. PMID: 28534885. PMCID: 5560483. 

Martin, Natasha K; Vickerman, Peter; Hickman, Matthew. How to eliminate HCV infection by antiviral treatment. J Hepatol. 2017 Jul;67(1):5-6. PMID: 28323120. 

Mills JC, Harman JS, Cook RL, Marlow NM, Harle CA, Duncan RP, Gaynes BN, Pence BW. Comparative effectiveness of dual vs. single-action antidepressants on HIV clinical outcomes in HIV-infected people with depression. AIDS. 2017;31(18):2515-2524. PMID: 28832409. PMCID: 5680130.

Mittal ML, Vashishtha D, Sun S, Jain S, Cuevas-Mota J, Garfein R, Strathdee SA, Werb D. History of medication-assisted treatment and its association with initiating others into injection drug use in San Diego, CA. Subst Abuse Treat Prev Policy. 2017;12(1):42. PMID: 28974239. PMCID: 5627474.

Monroe AK, Fleishman JA, Voss CC, Keruly JC, Nijhawan AE, Agwu AL, Aberg JA, Rutstein RM, Moore RD, Gebo KA, and the HIV Research Network. Assessing antiretroviral use during gaps in HIV primary vare using multisite Medicaid claims and clinical data. J Acquir Immune Defic Syndr. 2017;76(1):82-89. PMID: 28797023. PMCID: 5588917.

Morris SR, Zhao M, Smith DM, Vargas MV, Little SJ, Gianella S. Longitudinal viral dynamics in semen during early HIV infection. Clin Infect Dis. 2017;64(4):428-434. PMID: 28174909.

Noormahomed EV, Carrilho C, Ismail M, Noormahomed S, Nguenha A, Benson CA, Mocumbi AO, Schooley RT. The Medical Education Partnership Initiative (MEPI), a collaborative paradigm for institutional and human resources capacity building between high- and low- and middle-income countries: the Mozambique experience. Glob Health Action. 2017;10(1):1272879. PMID: 28452653. PMCID: 5328351.

Oliveira MF, Chaillon A, Nakazawa M, Vargas M, Letendre SL, Strain MC, Ellis RJ, Morris S, Little SJ, Smith DM, Gianella S. Early antiretroviral therapy is associated with lower HIV DNA molecular diversity and lower inflammation in cerebrospinal fluid but does not prevent the establishment of compartmentalized HIV DNA populationsPLoS Pathog. 2017;13(1):e1006112. PMCID: 5266327

Osorio G, Hoenigl M, Quartarolo J, Barger K, Morris SR, Reed SL, Lee J, Little SJ. Evaluation of opt-out inpatient HIV screening at an urban teaching hospitalAIDS Care. 2017:1-5. PMID: 28114789. PMCID: 5469710.

Patel, Eshan U; Gianella, Sara; Newell, Kevin; Tobian, Aaron A R; Kirkpatrick, Allison R; Nalugoda, Fredrick; Grabowski, Mary K; Gray, Ronald H; Serwadda, David; Quinn, Thomas C; Redd, Andrew D; Reynolds, Steven J. Elevated cytomegalovirus IgG antibody levels are associated with HIV-1 disease progression and immune activation. AIDS. 2017 Mar 27;31(6):807-813. PMID: 28121712. PMCID: 5352830. 

Perez-Santiago J, De Oliveira MF, Var SR, Day TR, Woods SP, Gianella S, Mehta SR. Increased cell-free mitochondrial DNA is a marker of ongoing inflammation and better neurocognitive function in virologically suppressed HIV-infected individuals. J Neurovirol. 2017;23(2):283-289. PMID: 27921220. PMCID: 5538255.

Raifman JR, Gebo KA, Mathews WC, Korthuis PT, Ghanem KG, Aberg JA, Moore RD, Nijhawan AE, Monroe AK, Berry SA, and the HIV Research Network. Gonorrhea and chlamydia case detection increased when testing increased in a multisite US HIV cohort, 2004-2014. J Acquir Immune Defic Syndr. 2017;76(4):409-416. PMID: 28777262. PMCID: 5680900.

Reinke AW, Balla KM, Bennett EJ, Troemel ER. Identification of microsporidia host-exposed proteins reveals a repertoire of rapidly evolving proteins. Nat Commun. 2017;8:14023. PMID: 28067236. PMCID: 5423893.

Rizk MG, Basler CF, Guatelli J. Cooperation of the Ebola Virus Proteins VP40 and GP1,2 with BST2 To Activate NF-kappaB Independently of Virus-Like Particle Trapping. J Virol. 2017;91(22). PMID: 28878074. PMCID: 5660480

Soonthornvacharin S, Rodriguez-Frandsen A, Zhou Y, Galvez F, Huffmaster NJ, Tripathi S, Balasubramaniam VR, Inoue A, de Castro E, Moulton H, Stein DA, Sanchez-Aparicio MT, De Jesus PD, Nguyen Q, Konig R, Krogan NJ, Garcia-Sastre A, Yoh SM, Chanda SK. Systems-based analysis of RIG-I-dependent signalling identifies KHSRP as an inhibitor of RIG-I receptor activation. Nat Microbiol. 2017;2:17022. PMID: 28248290. PMCID: 5338947

Spies G, Fennema-Notestine C, Cherner M, Seedat S. Changes in cognitive function in women with HIV infection and early life stressAIDS Care. 2017;29(1):14-23. PMID: 27396980. PMCID: 5157837.

Stano A, Leaman DP, Kim AS, Zhang L, Autin L, Ingale J, Gift SK, Truong J, Wyatt RT, Olson AJ, Zwick MB. Dense Array of Spikes on HIV-1 Virion Particles. J Virol. 2017;91(14). PMID: 28446665. PMCID: 5487557

Stone J, Martin NK, Hickman M, Hutchinson SJ, Aspinall E, Taylor A, Munro A, Dunleavy K, Peters E, Bramley P, Hayes PC, Goldberg DJ, Vickerman P. Modelling the impact of incarceration and prison-based hepatitis C virus (HCV) treatment on HCV transmission among people who inject drugs in Scotland. Addiction. 2017;112(7):1302-1314. PMID: 28257600. PMCID: 5461206.

Stoneham, Charlotte A; Singh, Rajendra; Jia, Xiaofei; Xiong, Yong; Guatelli, John. Endocytic activity of HIV-1 Vpu: Phosphoserine-dependent interactions with clathrin adaptors. Traffic. 2017 Aug;18(8):545-561. PMID: 28504462. PMCID: 5600163.

Swann J, Murry J, Young JA. Cytosolic sulfotransferase 1A1 regulates HIV-1 minus-strand DNA elongation in primary human monocyte-derived macrophages. Virol J. 2016;13:30. PMID: 26906565. PMCID: 4765207

Symons J, Chopra A, Malatinkova E, De Spiegelaere W, Leary S, Cooper D, Abana CO, Rhodes A, Rezaei SD, Vandekerckhove L, Mallal S, Lewin SR, Cameron PU. HIV integration sites in latently infected cell lines: evidence of ongoing replication. Retrovirology. 2017;14(1):2. PMID: 28086908. PMCID: 5237276.

Var SR, Day TR, Vitomirov A, Smith DM, Soontornniyomkij V, Moore DJ, Achim CL, Mehta SR, Perez-Santiago J. Mitochondrial injury and cognitive function in HIV infection and methamphetamine use. AIDS. 2016;30(6):839-848. PMID: 26807965. PMCID: 4785088

Vesa, Jouni; Chaillon, Antoine; Wagner, Gabriel A; Anderson, Christy M; Richman, Douglas D; Smith, Davey M; Little, Susan J. Increased HIV-1 superinfection risk in carriers of specific human leukocyte antigen alleles. AIDS. 2017 May 15;31(8):1149-1158. PMID: 28244954. PMCID: 5559224.

Vitomirov A, Ramirez-Gaona M, Mehta SR, Perez-Santiago J. Random shearing as an alternative to digestion for mitochondrial DNA processing in droplet digital PCRMitochondrion. 2017;32:16-18. PMID: 27838478. PMCID: 5218872.

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