Publications 2017 - present
The following are publications that acknowledge the Translational Virology Core

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Dinesha TR, Boobalan J, Sivamalar S, Solomon SS, Poongulali S, Pradeep A, Murugavel KG, Pachamuthu B, Smith DM, Saravanan S. HIV, HBV and HCV prevalence among high risk populations in South India. AIDS Res Hum Retroviruses. 2017 Nov 22. [Epub ahead of print] PMID: 29161880. (PMCID in process; NIHMSID 930258)

Dinesha TR, Boobalan J, Sivamalar S, Subashini D, Solomon SS, Murugavel KG, Balakrishnan P, Smith DM, Saravanan S. Occult HBV Infection in HIV Infected Adults and Evaluation of Pooled NAT for HBV.  Journal of Viral Hepatitis, accepted 2017.

Landais E, Murrell B, Briney B, Murrell S, Rantalainen K, et al. HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage. Immunity. 2017 November 21 ; 47(5):990-1003. (PMCID in process; NIHMSID 922223)

Salas-Espinoza KJ, Menchaca-Diaz R, Patterson TL, Urada LA, Smith D, Strathdee SA, Pitpitan EV. HIV Prevalence and Risk Behaviors in Male to Female (MTF) Transgender Persons in Tijuana, Mexico. AIDS Behav. 2017 Oct 14. doi: 10.1007/s10461-017-1931-2. [Epub ahead of print] PubMed PMID: 29032411. (PMCID in process: NIHMSID 913784).

Caputi TL, Smith DM, Ayers JW. Suicide Risk Behaviors Among Gay, Lesbian, Bisexual and Unsure Adolescents in the United States. JAMA, accepted 2017.

Chaillon A, Gianella S, Lada S, Jordan P, Ignacio C, Karris M, Richman DM, Mehta S, Little S, Wertheim J, Smith DM. Size, Composition and Evolution of HIV DNA Populations during Early Antiretroviral Therapy and Intensification with Maraviroc. J Virol,  accepted 2017.

Landais E, Murrell B, Briney B, Murrell S, Rantalainen K, Ramos A, Wickramasinghe L, Laird Smith M, Eren K, Berndsen Z, de Val N, Wu M, Cappelletti A, Umotoy J, Lie Y, Wrin T, Algate P, Chan-Hui PY, Karita E, The IAVI Protocol C Investigators & The IAVI African HIV Research Network, Ward AB, Wilson IA, Burton DR, Smith DM, Kosakovsky-Pond SL and Poignard P.  Evolutive features of HIV-1 Env critical for initiation and maturation of broadly neutralizing antibodies to the V2-apex. Immunity, accepted 2017.

Chaillon A, Smith DM, Vanpouille C, Lisco A, Jordan P, Caballero G, Vargas M, Gianella S, Mehta SR. HIV Trafficking Between Blood and Semen During Early Untreated HIV Infection. J Acquir Immune Defic Syndr. 2017; 74(1):95-102. doi: 10.1097/QAI.0000000000001156. PMID: 27548440; PMC5140710.

Oom AL, Smith D, Akrami K. Identification of putative unique immunogenic ZIKV and DENV1-4 peptides for diagnostic cellular based tests. Sci Rep. 2017 Jul 24; 7(1):6218. doi: 10.1038/s41598-017-05980-z. PMID: 28740150; PMC5524841.

Wertheim JO, Kosakovsky Pond SL, Forgione LA, Mehta SR, Murrell B, Shah S, Smith DM, Scheffler K, Torian LV. Social and Genetic Networks of HIV-1 Transmission in New York City. PLoS Pathog. 2017; 13(1):e1006000. doi: 10.1371/journal.ppat.1006000. PubMed PMID: 28068413; PMC5221827

Ahn MY, Wertheim JO, Kim WJ, Kim SW, Lee JS, Ann HW, Jeon Y, Ahn JY, Song JE, Oh DH, Kim YC, Kim EJ, Jung IY, Kim MH, Jeong W, Jeong SJ, Ku NS, Kim JM, Smith DM, Choi JY. Short Communication: HIV-1 Transmission Networks Across South Korea. AIDS Res Hum Retroviruses. 2017 Aug; 33(8):827-831. doi: 10.1089/aid.2016.0212. PMID: 28346838; PMC5564048.

Choi JY, Pond SLK, Anderson CM, Richman DD, Smith DM. Molecular Features of the V1-V4 Coding Region of Sexually Transmitted Human Immunodeficiency Virus Type 1. J Infect Dis. 2017; 215(10):1506-13. doi: 10.1093/infdis/jix184. PMID: 28419276. PMCID in process.

de Almeida SM, Rotta I, Ribeiro CE, Oliveira MF, Chaillon A, de Pereira AP, Cunha AP, Zonta M, Bents JF, Raboni SM, Smith D, Letendre S, Ellis RJ. Dynamic of CSF and serum biomarkers in HIV-1 subtype C encephalitis with CNS genetic compartmentalization-case study. J Neurovirol. 2017 Jun; 23(3):460-473. doi: 10.1007/s13365-017-0518-z.  PMID: 28247269; PMC5441962.

Wagner GA, Landais E, Caballero G, Phung P, Kosakovsky Pond SL, Poignard P, Richman DD, Little SJ, Smith DM. Intrasubtype B HIV-1 Superinfection Correlates with Delayed Neutralizing Antibody Response. J Virol. 2017 Aug 10; 91(17). pii: e00475-17. doi: 10.1128/JVI.00475-17. PMID: 28615205; PMC5553187.

Perez-Santiago J, Ramirez-Gaona M, Holm-Kennedy R, Smith DM,Fierer J.  Bacteremia and Skin Infections in Four Patients Caused by Helicobacter-Like Organisms. Open Forum Infectious Diseases, Volume 4, Issue 3, 1 July 2017, ofx074, https://doi.org/10.1093/ofid/ofx074. (PMCID in process: NIHMSID 911203)

Chaillon A, Nakazawa M, Wertheim JO, Little SJ, Smith DM, Mehta SR, Gianella S. No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men. J Virol. 2017 Aug 9. pii: JVI.00769-17. doi: 10.1128/JVI.00769-17. [Epub ahead of print] PubMed PMID: 28794047. (PMCID in process: NIHMSID 911206)

Saravanan S, Kausalya B, Gomathi S, Sivamalar S, Pachamuthu B, Selvamuthu P, Pradeep A, Sunil S, Mothi SN, Smith DM, Kantor R. Etravirine and Rilpivirine Drug Resistance Among HIV-1 Subtype C Infected Children Failing Non-Nucleoside Reverse Transcriptase Inhibitor-Based Regimens in South India. AIDS Res Hum Retroviruses. 2017 Jun; 33(6):567-574. doi: 10.1089/AID.2016.0133.  PubMed PMID: 27869478. (PMCID in process)

Chen X, Ye M, Duo L, Pang W, Smith D, Zhang C, Zheng YT. First description of two new HIV-1 recombinant forms CRF82_cpx and CRF83_cpx among drug users in Northern Myanmar. Virulence. 2017 Jul 4; 8(5):497-503. doi: 10.1080/21505594.2016.1226722. PMID: 27574950; PMC5538334.

Hu Y, Wan Z, Zhou YH, Smith D, Zheng YT, Zhang C. Identification of Two New HIV-1 Circulating Recombinant Forms (CRF87_cpx and CRF88_BC) from Reported Unique Recombinant Forms in Asia. AIDS Res Hum Retroviruses. 2017 Apr; 33(4):353-358. doi: 10.1089/AID.2016.0252.  PMID: 27762598;  PMC5372766.

Morris SR, Zhao M, Smith DM, Vargas MV, Little SJ, Gianella S. Longitudinal Viral Dynamics in Semen During Early HIV Infection. Clin Infect Dis. 2017 Feb 15; 64(4):428-434. doi: 10.1093/cid/ciw784. PMID: 28174909. (PMCID in process)

Oliveira MF, Chaillon A, Nakazawa M, Vargas M, Letendre SL, Strain MC, Ellis RJ, Morris S, Little SJ, Smith DM, Gianella S. Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations. PLoS Pathog. 2017 Jan 3; 13(1):e1006112. doi: 10.1371/journal.ppat.1006112. eCollection 2017 Jan. PMID: 28046096; PMC5266327.

Glinka ER, Smith DM, Johns ST. Now is the Time to Study the Timing of Influenza Vaccine. HIV Med. 2017 Jan 24. doi: 10.1111/hiv.12486. PMID: 28116796. (PMCID not applicable)

Vesa J, Chaillon A, Wagner GA, Anderson CM, Richman DD, Smith DM, Little SJ. Increased HIV-1 superinfection risk in carriers of specific human leukocyte antigen alleles. AIDS. 2017 May 15; 31(8):1149-1158. doi: 10.1097/QAD.0000000000001445. PMID: 28244954;  PMC5559224.

Chaillon A, Essat A, Frange P, Smith DM, Delaugerre C, Barin F, Ghosn J, Pialoux G, Robineau O, Rouzioux C, Goujard C, Meyer L, Chaix ML, on behalf the APCS. Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies. Retrovirology. 2017; 14(1):15. doi: 10.1186/s12977-017-0339-4. PubMed PMID: 28222757; PMCID: PMC5322782.

Green N, Hoenigl M, Chaillon A, Anderson CM, Kosakovsky Pond SL, Smith DM, Little SJ. Partner services in adults with acute and early HIV infection. AIDS. 2017; 31(2):287-93. doi: 10.1097/QAD.0000000000001308. PMID: 27831950; PMC5177524.

Gianella S, Taylor J, Brown TR, Kaytes A, Achim CL, Moore DJ, Little SJ, Ellis RJ, Smith DM. Can research at the end of life be a useful tool to advance HIV cure? AIDS. 2017; 31(1):1-4. doi: 10.1097/QAD.0000000000001300. PMID: 27755112; PMC5137789.

Chen X, Ye M, Pang W, Smith DM, Zhang C, Zheng YT. First Appearance of HIV-1 CRF07_BC and CRF08_BC Outside China. AIDS Res Hum Retroviruses. 2017 Jan; 33(1):74-76. doi: 10.1089/AID.2016.0169. . (PMCID not applicable)

 

 

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