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Genomics and Sequencing

The Genomics and Sequencing Core laboratory provides expertise in genomics and sequence analysis and develops new services in these fields at the request of core users.

The Genomics and Sequencing Core services include:

  1. Validation of gene expression data and absolute quantitation of gene copy numbers using real-time quantitative qPCR technology (TaqMan and SYBRGreen) and droplet digital PCR (ddPCR).
  2. Ion Torrent PGM next generation sequencing assays, including viral genotyping, miRNA expression, and AmpliSeq™ and custom resequencing for detection of SNPs & somatic mutations.
  3. Bioinformatics analysis of gene expression and next generation sequencing data.

Click the links at the left to see a complete list of services and  determine how the Genomics and Sequencing Core can aid your research.

If you are looking for the research activities of Dr. Christopher Woelk, former core leader, please visit his laboratory website.

If work performed for you at the CFAR Genomics and Sequencing Core results in publication, please acknowledge us with the following statements so that we may continue to bring you excellent service:

This work was performed with the support of the Genomics and Sequencing Core at the UC San Diego Center for AIDS Research (P30 AI036214), the VA San Diego Healthcare System, and the Veterans Medical Research Foundation.

And if work performed for you utilized the Bio-Rad QX100 droplet digital PCR or Ion Torrent PGM Systems:

This work was performed with the support of the James B. Pendleton Charitable Trust.

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Stein Clinical Research Building
UC San Diego
9500 Gilman Drive, MC 0679
La Jolla, CA 92093

858-552-8585, ext. 2585

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